Publications

Peer-reviewed conference proceedings

56 peer-reviewed conference papers and proceedings from international computer science, bioinformatics, computational chemistry and parallel-computing venues.

2018 (3 entries)

2018

Mining Association rule with Attribute Oriented Induction High level Emerging Pattern (AOI-HEP) data mining technique

HL. Warnars, F.L. Gaol, Y. Heryadi, A. Trisetyanso, H. Pérez-Sánchez
Second International Conference on Inventive Communication and Computational Technologies (ICICCT 2018)
2018

Accelerating Drugs Discovery with Deep Reinforcement Learning: An Early Approach

A. Serrano, B. Imbernón, H. Pérez-Sánchez, J.M. Cecilia, A. Bueno-Crespo, JL. Abellán
ICPP '18 — Proceedings of the 47th International Conference on Parallel Processing
2018

Increasing Molecular Dynamics Simulations Throughput by Virtualizing Remote GPUs with rCUDA

J. Prades, C. Reaño, F. Silla, B. Imbernón, H. Pérez-Sánchez, J.M. Cecilia
ICPP '18, 47th ICPP

2017 (8 entries)

2017

Implementation of an Efficient Blind Docking Technique on HPC Architectures for the Discovery of Allosteric Inhibitors

H. Pérez-Sánchez, J.P. Cerón-Carrasco, J.M. Cecilia
46th International Conference on Parallel Processing Workshops (ICPPW)
2017

Parallel Desolvation Energy Term Calculation for Blind Docking on GPU Architectures

H. Saad, N. Nouali-Taboudjemat, A. Rahmoun, B. Imbernón, H. Pérez-Sánchez, J.M. Cecilia
46th ICPPW 2017
2017

The Forex Market as an Elastic Network Model

A. Contreras, S. Navarro, A. Llanes, A. Muñóz, H. Pérez-Sánchez, J.M. Cecilia
International Conference on Intelligent Environments (IE 2017)
2017

Cribado virtual mediante un algoritmo evolutivo global paralelo

S.P. Martín, J.L. Redondo, H. den-Haan, H. Pérez-Sánchez, P.M. Ortigosa
Jornadas Sarteco 2017
2017

Técnicas heurísticas paralelas para el descubrimiento de nuevos fármacos

B. Imbernón, J.M. Cecilia, H. Pérez-Sánchez, D. Giménez
Jornadas Sarteco 2017
2017

Quality measurement of android messaging application based on user experience in Microblogsch

R. Arianto, FL. Gaol, E. Abdurachman, Y. Heryadi, HL. Warnars, B. Soewito, H. Pérez-Sánchez
International Conference on Applied Computer and Communication Technologies (ComCom 2017)
2017

Easy understanding for mining discriminant itemset with emerging patterns

HL. Warnars, FL. Gaol, N.F. Sianipar, B.S. Abbas, H. Pérez-Sánchez
ComCom 2017
2017

Survey of emerging patterns

N. Anwar, HL. Warnars, H. Pérez-Sánchez
IEEE International Conference on Cybernetics and Computational Intelligence (CyberneticsCom 2017)

2016 (11 entries)

2016

Multiobjective based scoring function for ligand based virtual screening

S. Puertas Martín, H. den-Haan, J. López Redondo, H. Pérez-Sánchez, P. Martínez Ortigosa
IWBBIO 2016, 258-262
2016

GrantFinder, a web based tool for the search of research grant calls

J. Peña-García, H. den-Haan, A. Caballero, B. Imbernón, J.P. Cerón-Carrasco, A. Vicente-Contreras, H. Pérez-Sánchez
IWBBIO 2016, 326-333
2016

A hybrid machine learning and molecular modeling methodology for the prediction of novel blood anticolagulants

R. Rodríguez-Schmidt, J. Peña-García, A. Pérez-Garrido, H. den-Haan, A. Bueno-Crespo, J.P. Cerón-Carrasco, A. Thapa, J. Atli-Benediktsson, J. Soto, H. Pérez-Sánchez
IWBBIO 2016, 334-342
2016

ZincFetcher: a tool for easy compound filtering from ZINC database

J. Peña-García, A. Pérez-Garrido, A. Muñoz, H. den-Haan, B. Imbernón, J.P. Cerón-Carrasco, A. Thapa, J. Soto, A. Banegas-Luna, H. Pérez-Sánchez
IWBBIO 2016, 343-351
2016

HYDROWEB, an online tool for the calculation of hydrodynamic properties of macromolecules

H. Pérez-Sánchez, J. Peña-García, H. den-Haan, R. Rodríguez-Schmidt, A.N. Raposo, M. Bouarkat, S.A. Sabeur, F.G. Díaz-Baños
IWBBIO 2016, LNCS 9656:82-90
2016

Fuzzy vs Kmeans clustering in QSAR data partition. A comparative study

F. Girón-Rodríguez, A. Pérez-Garrido, H. Pérez-Sánchez, J. Soto
IWBBIO 2016, 151-152
2016

Non-steroidal anti-inflammatory drugs as inhibitors of cyclooxygenases: what we have learned and what is next

J.P. Cerón-Carrasco, J. Peña, H. Pérez-Sánchez
IWBBIO 2016, 55-56
2016

Molecular modeling studies of thieno[3,2-c]pyran analogues as inhibitor against the anti-inflammatory target COX-2

D. Kumar-Yadav, S. Misra, P. Sharma, H. Pérez-Sánchez, H. Singh, S. Kumar
IWBBIO 2016, 288-302
2016

Parallel Ant Colony Optimization for the HP Protein Folding Problem

A. Llanes, C. Velez, A.M. Sánchez, H. Pérez-Sánchez, J.M. Cecilia
IWBBIO 2016, LNCS 9656:615-626
2016

Virtual Screening: A Challenge for Deep Learning

J. Pérez-Sianes, H. Pérez-Sánchez, F. Díaz
PACBB16, AISC 477:13-22
2016

Multiobjective based scoring function for ligand based Virtual Screening

S.P. Martín, J.L. Redondo, H. den-Haan, H. Pérez-Sánchez, P.M. Ortigosa
XIII Global Optimization Workshop (GOW'16), 105-108

2015 (8 entries)

2015

A GPU solution of the HP Protein Folding Problem based on UEGO

J.M. García-Martínez, E.M. Garzón, J.M. Cecilia, H. Pérez-Sánchez, P.M. Ortigosa
IWBBIO 2015
2015

Molecular Dynamics Simulations of Ligand Recognition upon Binding Antithrombin: A MM/GBSA Approach

X. Zhang, H. Pérez-Sánchez, F. Lightstone
IWBBIO 2015, 584-593
2015

Improving activity prediction of Adenosine A2B receptor antagonists by machine learning methods

F. Ghasemi, A. Mehri, J. Peña-García, H. den-Haan, A. Pérez-Garrido, A. Fassihi, H. Pérez-Sánchez
IWBBIO 2015, 635-644
2015

Support Vector Machines Prediction of drug solubility on GPUs

G. Cano, J. García-Rodríguez, S. Orts-Escolano, D. Kumar-Yadav, A. Pérez-Garrido, H. Pérez-Sánchez
IWBBIO 2015, 645-654
2015

DIA-DB: a web-accessible database for the prediction of diabetes drugs

A. Sánchez-Pérez, A. Muñóz, J. Peña-García, H. den-Haan, N. Bekas, A. Katsikoudi, A.G. Tzakos, H. Pérez-Sánchez
IWBBIO 2015, 655-663
2015

Molecular docking and Biological evaluation of functionalized benzo[h]quinolines as Colon cancer agents

R. Pratap, D. Kumar-Yadav, S. Singh, R. Rai, N. Kumar, H. Uhm, H. Singh, H. Pérez-Sánchez
IWBBIO 2015, 664-673
2015

Applications of High Performance Computing in Bioinformatics, Computational Biology and Computational Chemistry

H. Pérez-Sánchez, A. Fassihi, J.M. Cecilia, H.H. Ali, M. Cannataro
IWBBIO 2015, 527-541
2015

Enhancing the parallelization of Non-Bonded Interactions Kernel for Virtual Screening on GPUs

B. Imbernón, A. Llanes, J. Peña-García, J.L. Abellán, H. Pérez-Sánchez, J.M. Cecilia
IWBBIO 2015, 620-626

2014 (8 entries)

2014

Parallel Computation of Non-Bonded Interactions in Drug Discovery: Nvidia GPUs vs. Intel Xeon Phi

J. Fang, A. Lucia Varbanescu, B. Imbernón, J.M. Cecilia, H. Pérez-Sánchez
IWBBIO 2014, 579-588
2014

Application of parallel blind docking with BINDSURF for the study of platinum derived compounds as anticancer drugs

J.P. Cerón-Carrasco, J. Cerezo, J. Zúñiga, A. Requena, J. Contreras-García, S. Chavan, M. Manrubia-Cobo, B. Imbernón, J.M. Cecilia, H. Pérez-Sánchez
IWBBIO 2014, 972-976
2014

An Efficient Solvent Accessible Surface Area calculation applied in Ab Initio Protein Structure Prediction

D. Bonetti, H. Pérez-Sánchez, A. Delbem
IWBBIO 2014, 575-578
2014

An improved Fuzzy Clustering methodology applied to the study of Protein Conformational Ensembles

D. Man, I. Timón-Pérez, J. Soto, A. Flores-Sintas, J.M. Cecilia, H. Pérez-Sánchez
IWBBIO 2014, 1630
2014

The role of High Performance Computing in Bioinformatics

H. Pérez-Sánchez, J.M. Cecilia, I. Merelli
IWBBIO 2014, 494-506
2014

Solving the HP Protein Folding Problem by an Evolutionary Algorithm

J.M. García-Martínez, E.M. Garzón, J.M. Cecilia, H. Pérez-Sánchez, P.M. Ortigosa
CMMSE 2014, 597-601
2014

Modeling Tasks Synchronization in the Fault-Tolerant Cyber-Physical Systems

V. Mezhuyev, M. Ariff-Ameedeen, H. Pérez-Sánchez, B.A. Mustafa, R. Samikanny
ISCI 2014 — IEEE Symposium on Computers & Informatics
2014

Optimizations to enhance sustainability of MPI applications

J. Carretero et al.
ESAA 2014, EuroMPI/Asia 2014, 145-150

2013 (6 entries)

2013

Impact of implicit solvation models on database enrichment in GPU based blind Virtual Screening

G.D. Guerrero, J.M. Cecilia, J.M. García, H. Pérez-Sánchez
IWBBIO 2013, 731-734
2013

A GPU based Conformational Entropy Calculation Method

Q. Zhang, J.M. García, J. Wang, T. Hou, H. Pérez-Sánchez
IWBBIO 2013, 735-744
2013

Improving Drug Discovery using a neural networks based parallel scoring function

H. Pérez-Sánchez, G.D. Guerrero, J.M. Garcia, J. Peña, J.M. Cecilia, G. Cano, S. Orts-Escolano, J. Garcia-Rodriguez
International Joint Conference on Neural Networks (IJCNN 2013), 1436-1440
2013

Improvement of Virtual Screening predictions using Support Vector Machines

G. Cano, M. Manrubia-Cobo, H. den-Haan, J. García-Rodríguez, H. Pérez-Sánchez
CMMSE 2013, 1144-1153
2013

A GPU based Volunteer Computing Platform for the discovery of bioactive compounds

H. Pérez-Sánchez, G.D. Guerrero, F. Sanz, J.M. Cecilia
CMMSE 2013, 1157-1160
2013

Application of Ant Colony Optimization in an hybrid coarse-grained and all-atom based Protein Structure prediction strategy

J. Peña, J.M. Cecilia, H. Pérez-Sánchez
CMMSE 2013, 1154-1156

2012 (3 entries)

2012

Parallelization of Virtual Screening in Drug Discovery on Massively Parallel Architectures

G.D. Guerrero, H. Pérez-Sánchez, J.M. Cecilia, J.M. García
20th Euromicro International Conference on Parallel, Distributed, and Network-Based Processing (PDP 2012), 588-595
2012

Analytical solvent accessible surface area calculation on GPUs

E.J. Cepas Quiñonero, P. Koehl, H. Pérez-Sánchez, J.M. García
12th International Conference on Computational and Mathematical Methods in Science and Engineering (CMMSE 2012), 307-309
2012

Parallel blind Virtual Screening with implicit solvation models

H. Pérez-Sánchez, E.J. Cepas Quiñonero, J.M. Cecilia, J.M. García
Applied Computing 2012 (IADIS), 421-423

2011 (6 entries)

2011

Effective Non-Bonded Interactions Kernel for Virtual Screening on emergent parallel architectures

G.D. Guerrero, H. Pérez-Sánchez, W. Wenzel, J.M. Cecilia, J.M. García
PACBB11, 5th International Conference on Practical Applications of Computational Biology & Bioinformatics
2011

Accelerating Grid Kernels for Virtual Screening on Graphics Processing Units

I. Sánchez-Linares, H. Pérez-Sánchez, J.M. Cecilia, J.M. García
ParCo 2011, Advances in Parallel Computing 22, 413-420
2011

A Pipeline Pilot based SOAP implementation of FlexScreen for High-Throughput Virtual Screening

H. Pérez-Sánchez, I. Kondov, J.M. García, K. Klenin, W. Wenzel
IWSG-Life 2011 — 3rd International Workshop on Science Gateways for Life Sciences
2011

Accelerating multiple target drug screening on GPUs

I. Sánchez-Linares, H. Pérez-Sánchez, G.D. Guerrero, J.M. Cecilia, J.M. García
CMSB 2011 — 9th International Conference on Computational Methods in Systems Biology, 95-102
2011

BINDSURF: a fast blind Virtual Screening methodology on GPUs

I. Sánchez-Linares, H. Pérez-Sánchez, J.M. Cecilia, J.M. García
NETTAB 2011 — Network Tools and Applications in Biology, 95-97
2011

MURCIA: Fast parallel solvent accessible surface area calculation on GPUs and application to drug discovery and molecular visualization

E.J. Cepas Quiñonero, H. Pérez-Sánchez, J.M. Cecilia, J.M. García
NETTAB 2011, 52-55

2009 (1 entries)

2009

Implementation of an effective non-bonded interactions kernel for biomolecular simulations on the Cell processor

H. Pérez-Sánchez, W. Wenzel
Proceedings of Massively Parallel Computational Biology on GPUs, Lecture Notes in Informatics 154, 721-729

2008 (1 entries)

2008

High Throughput in-silico Screening against flexible protein receptors

H. Pérez-Sánchez, B. Fischer, H. Merlitz, W. Wenzel
NIC Workshop 2008 — From Computational Biophysics to Systems Biology, NIC Series 40, 133-136

2007 (1 entries)

2007

Receptor specific forcefield: improving classical forcefields with quantum mechanical calculations

H. Pérez-Sánchez, B. Fischer, H. Merlitz, W. Wenzel
NIC Workshop 2007 — From Computational Biophysics to Systems Biology, Jülich, NIC Series 36, 263-265
Source: Horacio Pérez-Sánchez CV (January 2025). For the most current list, see Horacio’s ORCID record.

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